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Pre-build transcriptome indices

List of pre-built transcriptome indices for use with rf-map

ID Name Description Bowtie1 Bowtie2
1 Homo sapiens rRNA Homo sapiens ribosomal RNAs [18S, 25S, 5S, and 5.8S]
2 Mus musculus rRNA Mus musculus ribosomal RNAs [18S, 25S, 5S, and 5.8S]
3 Saccharomyces cerevisiae rRNA Saccharomyces cerevisiae ribosomal RNAs [18S, 25S, 5S, and 5.8S]
4 Arabidopsis thaliana rRNA Arabidopsis thaliana ribosomal RNAs [18S, 25S, 5S, and 5.8S]
5 Homo sapiens RefSeq longest Homo sapiens RefSeq RNAs [Assembly: hg38; Coding + non-coding; Only the longest isoform for each gene]
6 Mus musculus RefSeq longest Mus musculus RefSeq RNAs [Assembly: mm10; Coding + non-coding; Only the longest isoform for each gene]

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